The victory moves the Madrid-based team up to sixth in the Primera Division table and they are looking good for qualification for next season's Europa League.
Flores believes that qualifying for Europe and the club's UEFA Super Cup success back in August will represent a good season for the side.
"The team started the season well. The middle was not so good but we are finishing strongly. If we finish in the European places combined with our title [UEFA Super Cup] then it would not have been a bad year," the coach told Spanish media after the Levante win.
Despite the comfortable Sergio Aguero-inspired victory, his striking partner Diego Forlan's reaction to being substituted was a sour note on the victory.
"I understand that it is a difficult time for him but the coach has to make decisions and decide what is best for the team," he added.
Atletico are up against Deportivo next weekend where they will be hoping to continue their impressive form.
